== Integrated lecture and tutorials ''Acquisition and Analysis of Neuronal Data'' ==

=== Dates, Lecturers, and Location ===

|| '''Module''' || Part of the [[http://www.bccn-berlin.de/Graduiertenprogramm/Masterprogramm/|Master Program Computation Neuroscience]]; [[https://www.bccn-berlin.de/digitalAssets/0/596_2CNS_Catalogue_20130325.pdf/|BCCN Modulkatalog]] ||
||<(|2> '''Dates and Rooms:''' || Lecture: Fridays from 09:15 to 10:45 in the lecture hall 102 (Haus 6) ||
|| Tutorials: Fridays from 11:00 (st!) to 12:30 in the computer pool of Haus 2 ||
||<(|2> '''Lecturers:''' || ''Part 1:'' [[http://user.cs.tu-berlin.de/~blanker/|Benjamin Blankertz]], Matthias Schultze-Kraft ||
|| ''Part 2:'' [[http://itb.biologie.hu-berlin.de/~kempter/|Richard Kempter]] ||
|| '''Location:''' || Bernstein Center for Computational Neurosciences Berlin, [[http://maps.google.de/maps?f=q&hl=de&geocode=&q=Philippstr.+13,+Berlin&jsv=107&sll=50.889174,10.546875&sspn=11.859882,34.453125&ie=UTF8&ll=52.525034,13.38757&spn=0.011162,0.033646&z=16|Haus 6 (lecture) and Haus 2 (tutorials), Philippstr. 13]] ||
|| '''TU University calendar:''' || [[http://lsf.tubit.tu-berlin.de/qisserver/servlet/de.his.servlet.RequestDispatcherServlet?state=verpublish&status=init&vmfile=no&publishid=140886&moduleCall=webInfo&publishConfFile=webInfo&publishSubDir=veranstaltung|LSF entry]] ||

Further Information on the web page of the [[http://www.bccn-berlin.de/Graduate+Programs/Courses+and+Modules/Acquisition_and_Analysis_of_Neural_Data/?contentId=2050|BCCN-B]].


=== Topics ===

This part of the module "Acquisition and Analysis of Neural Data" of the [[http://www.bccn-berlin.de/Graduate+Programs/Master_Program/|Master Program in Computational Neuroscience]] provides knowledge on statistical analyses of neural data: 
   * ''Part 1:'' Statistical analysis of electroencephalogram (EEG) data, e.g., investigation of event-related potentials (ERPs) and event-related desynchronization (ERD); spatial filters; classification, adaptive classifiers. 
   * ''Part 2:'' Analysis of Spike Trains (spike statistics, neural coding, theory of point processes, linear systems theory, correlation analysis, spike-triggered average, reverse correlation, STRF, neural decoding, signal detection theory, infomation theory, signal-to-noise ratio analysis) - see [[http://itb.biologie.hu-berlin.de/~kempter/Teaching/2013-SS-AAND/index.html|here]] for details on the second part.

Required background knowledge: Basic knowledge in Neurobiology and Mathematics at the level of the first year of the Master Program in Computational Neuroscience. 

=== Course Certificates ===

To obtain course certificates, at least 75% of the points in the exercises (5 ECTS) must be attained. 

To obtain the full 5 ECTS for the tutorial, every student has to complete an additional small project (2 ECTS). The tasks of the project will be distributed by Richard Kempter.

The final oral exam of the module "Acquisition and Analysis of Neuronal Data will be on September 24th 2013.

=== Material ===

Removed. Updated material can be found in more recent courses.
##   * Lecture #01: [[http://doc.ml.tu-berlin.de/bbci/SS13_IL_AAND/AAND2013_lecture01_print.pdf|script]]
##   * Lecture #02: [[http://doc.ml.tu-berlin.de/bbci/SS13_IL_AAND/AAND2013_lecture02_print.pdf|script]]
##   * Lecture #03: [[http://doc.ml.tu-berlin.de/bbci/SS13_IL_AAND/AAND2013_lecture03_print.pdf|script]]
##   * Lecture #04: [[http://doc.ml.tu-berlin.de/bbci/SS13_IL_AAND/AAND2013_lecture04_print.pdf|script]]
##   * Lecture #05: [[http://doc.ml.tu-berlin.de/bbci/SS13_IL_AAND/AAND2013_lecture05_print.pdf|script]]
##   * Lecture #06: [[http://doc.ml.tu-berlin.de/bbci/SS13_IL_AAND/AAND2013_lecture06_print.pdf|script]] 

=== Background material for Part 1 (BCI) ===

   * Blankertz B, Lemm S, Treder MS, Haufe S, Müller KR. ''Single-trial analysis and classification of ERP components - a tutorial''. !NeuroImage, 56:814-825, 2011. [[http://ml.cs.tu-berlin.de/publications/BlaLemTreHauMue10.pdf|pdf]] [[http://dx.doi.org/10.1016/j.neuroimage.2010.06.048|url]]
   * Blankertz B, Tomioka R, Lemm S, Kawanabe M, Müller KR. ''Optimizing spatial filters for robust EEG single-trial analysis''. IEEE Signal Proc Magazine, 25(1):41-56, 2008. [[http://ml.cs.tu-berlin.de/publications/BlaTomLemKawMue08.pdf|pdf]] [[http://dx.doi.org/10.1109/MSP.2008.4408441|url]]
   * Treder MS, Blankertz B, ''(C)overt attention and visual speller design in an ERP-based brain-computer interface''. Behav Brain Funct, 6:28, 2010. [[http://www.behavioralandbrainfunctions.com/content/6/1/28|url]]
   * Parra LC, Spence CD, Gerson AD, Sajda P. ''Recipes for the linear analysis of EEG''. !NeuroImage, 28(2):326-341, 2005. [[http://doc.ml.tu-berlin.de/bbci/references/ParSpeGerSaj05.pdf|pdf]]
   * Parra LC, Christoforou C, Gerson AD, Dyrholm M, Luo A, Wagner M, Philastides M, Sajda P. ''Spatiotemporal Linear Decoding of Brain State''. IEEE Signal Proc Magazine, 25(1): 107-115, 2008. [[http://doc.ml.tu-berlin.de/bbci/references/ParChrGerDyrLuoWagPhiSaj08.pdf|pdf]]
   * Key AP, Dove GO, Maguire MJ. ''Linking brainwaves to the brain: an ERP primer''. Dev Neuropsychol. 2005;27(2):183-215. [[http://doc.ml.tu-berlin.de/bbci/references/KeyDovMag05.pdf|pdf]]
   * Pfurtscheller G, Lopes da Silva FH. ''Event-related EEG/MEG synchronization and desynchronization: basic principles''. Clin Neurophysiol, 110(11):1842-1857, Nov 1999. [[http://ml.cs.tu-berlin.de/bbci/papers/PfuSil99.pdf|pdf]]
   * Wolpaw JR, Birbaumer N, !McFarland DJ, Pfurtscheller G, Vaughan TM. ''Brain-computer interfaces for communication and control''. Clin. Neurophysiol., 113:767-791, 2002. [[http://ml.cs.tu-berlin.de/bbci/papers/WolBirFarPfuVau02.pdf|pdf]]
   * Dornhege G, Millán J del R, Hinterberger T, !McFarland DJ, Müller KR, editors. ''Toward Brain-Computer Interfacing''. MIT Press, Cambridge, MA, 2007.
   * Wolpaw JR, Wolpaw EW, editors. ''Brain-Computer Interfaces: Principles and Practice''. Oxford University Press, 2012. ISBN-13: 978-0195388855.