Attachment 'sheet07.m'

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   1 function sheet07
   2 load('stud-data.mat')
   3 
   4 % compute kernel matrices
   5 disp('computing kernel matrices...')
   6 KR = full(Xtr'*Xtr);
   7 KS = full(Xts'*Xts);
   8 KSR = full(Xts'*Xtr);
   9 
  10 % compute the alphas
  11 disp('learning one-class-SVM...')
  12 C = ?; % adjust C 
  13 alpha = oneclass(KR, C);
  14 
  15 % compute anomaly scores
  16 as = compute_scores(KS, KSR, KR, alpha); 
  17 
  18 Ap = (as > 1);
  19 
  20 predicted_attacks = find(Ap)'
  21 % ...
  22 
  23 function [x,y] = pr_loqo2(c, H, A, b, l, u)
  24 %[X,Y] = PR_LOQO2(c, H, A, b, l, u)
  25 %
  26 %loqo solves the quadratic programming problem
  27 %
  28 %minimize   c' * x + 1/2 x' * H * x
  29 %subject to A'*x = b
  30 %           l <= x <= u
  31 %
  32 % Dimensions: c : N-column vector
  33 %             H : NxN matrix
  34 %             A : N-row vector
  35 %             b : real number
  36 %             l : N-column vector
  37 %             b : N-column vector
  38 % 
  39 %             x : N-column vector
  40 %             y : Objective value
  41 %             
  42 %for a documentation see R. Vanderbei, LOQO: an Interior Point Code
  43 %                        for Quadratic Programming
  44 margin = 0.05; bound  = 100; sigfig_max = 8; counter_max = 50;
  45 [m, n] = size(A); H_x    = H; H_diag = diag(H);
  46 b_plus_1 = 1; c_plus_1 = norm(c) + 1;
  47 one_x = -ones(n,1); one_y = -ones(m,1);
  48 for i = 1:n H_x(i,i) = H_diag(i) + 1; end;
  49 H_y = eye(m); c_x = c; c_y = 0;
  50 R = chol(H_x); H_Ac = R \ ([A; c_x'] / R)';
  51 H_A = H_Ac(:,1:m); H_c = H_Ac(:,(m+1):(m+1));
  52 A_H_A = A * H_A; A_H_c = A * H_c;
  53 H_y_tmp = (A_H_A + H_y); y = H_y_tmp \ (c_y + A_H_c);
  54 x = H_A * y - H_c; g = max(abs(x - l), bound);
  55 z = max(abs(x), bound); t = max(abs(u - x), bound);
  56 s = max(abs(x), bound); mu = (z' * g + s' * t)/(2 * n);
  57 sigfig = 0; counter = 0; alfa = 1;
  58 while ((sigfig < sigfig_max) * (counter < counter_max)),
  59   counter = counter + 1; H_dot_x = H * x;
  60   rho = - A * x + b; nu = l - x + g; tau = u - x - t;
  61   sigma = c - A' * y - z + s + H_dot_x;
  62   gamma_z = - z; gamma_s = - s;
  63   x_dot_H_dot_x = x' * H_dot_x;
  64   primal_infeasibility = norm([tau; nu]) / b_plus_1;
  65   dual_infeasibility = norm([sigma]) / c_plus_1;
  66   primal_obj = c' * x + 0.5 * x_dot_H_dot_x;
  67   dual_obj = - 0.5 * x_dot_H_dot_x + l' * z - u' * s + b'*y; %%%
  68   old_sigfig = sigfig;
  69   sigfig = max(-log10(abs(primal_obj - dual_obj)/(abs(primal_obj) + 1)), 0);
  70   hat_nu = nu + g .* gamma_z ./ z; hat_tau = tau - t .* gamma_s ./ s;
  71   d = z ./ g + s ./ t;
  72   for i = 1:n H_x(i,i) = H_diag(i) + d(i); end;
  73   H_y = 0;  c_x = sigma - z .* hat_nu ./ g - s .* hat_tau ./ t;
  74   c_y = rho; R = chol(H_x); H_Ac = R \ ([A; c_x'] / R)';
  75   H_A = H_Ac(:,1:m); H_c = H_Ac(:,(m+1):(m+1));
  76   A_H_A = A * H_A; A_H_c = A * H_c; H_y_tmp = (A_H_A + H_y);
  77   delta_y = H_y_tmp \ (c_y + A_H_c); delta_x = H_A * delta_y - H_c;
  78   delta_s = s .* (delta_x - hat_tau) ./ t;
  79   delta_z = z .* (hat_nu - delta_x) ./ g;
  80   delta_g = g .* (gamma_z - delta_z) ./ z;
  81   delta_t = t .* (gamma_s - delta_s) ./ s;
  82   gamma_z = mu ./ g - z - delta_z .* delta_g ./ g;
  83   gamma_s = mu ./ t - s - delta_s .* delta_t ./ t;
  84   hat_nu = nu + g .* gamma_z ./ z;
  85   hat_tau = tau - t .* gamma_s ./ s;
  86   c_x = sigma - z .* hat_nu ./ g - s .* hat_tau ./ t;
  87   c_y = rho; H_Ac = R \ ([A; c_x'] / R)';
  88   H_A = H_Ac(:,1:m); H_c = H_Ac(:,(m+1):(m+1));
  89   A_H_A = A * H_A; A_H_c = A * H_c;
  90   H_y_tmp = (A_H_A + H_y); delta_y = H_y_tmp \ (c_y + A_H_c);
  91   delta_x = H_A * delta_y - H_c; delta_s = s .* (delta_x - hat_tau) ./ t;
  92   delta_z = z .* (hat_nu - delta_x) ./ g;
  93   delta_g = g .* (gamma_z - delta_z) ./ z;
  94   delta_t = t .* (gamma_s - delta_s) ./ s;
  95   alfa = - 0.95 / min([delta_g ./ g; delta_t ./ t;
  96                       delta_z ./ z; delta_s ./ s; -1]);
  97   mu = (z' * g + s' * t)/(2 * n);
  98   mu = mu * ((alfa - 1) / (alfa + 10))^2;
  99   x = x + delta_x * alfa; g = g + delta_g * alfa;
 100   t = t + delta_t * alfa; y = y + delta_y * alfa;
 101   z = z + delta_z * alfa; s = s + delta_s * alfa;
 102 end
 103 
 104 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 105 %
 106 % Your solutions below!
 107 %
 108 
 109 % 3. Train a one-class SVM given the kernel matrix K and the
 110 % regularization constant C.
 111 function alpha = oneclass(K, C)
 112 % ...
 113 
 114 % 4. Compute the outlier scores given
 115 %    KR: kernel matrix on training data
 116 %    KS: kernel matrix on test data
 117 %    KSR: kernel matrix on test data / training data
 118 %    alpha: learned kernel coefficients
 119 function scores = compute_scores(KS, KSR, KR, alpha)
 120 % ...

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  • [get | view] (2010-06-17 12:21:00, 2873.9 KB) [[attachment:bioinf.pdf]]
  • [get | view] (2010-05-04 11:11:44, 3591.3 KB) [[attachment:cca_lecture.pdf]]
  • [get | view] (2010-06-08 09:37:55, 209.6 KB) [[attachment:data.tar.gz]]
  • [get | view] (2010-04-19 09:59:41, 65.6 KB) [[attachment:full_sheet01.pdf]]
  • [get | view] (2010-04-20 09:18:53, 61.3 KB) [[attachment:full_sheet02.pdf]]
  • [get | view] (2010-04-27 09:42:10, 70.0 KB) [[attachment:full_sheet03.pdf]]
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  • [get | view] (2010-05-27 10:02:14, 76.7 KB) [[attachment:full_sheet07.pdf]]
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  • [get | view] (2010-06-15 10:05:24, 120.8 KB) [[attachment:full_sheet10.pdf]]
  • [get | view] (2010-06-22 08:07:29, 71.3 KB) [[attachment:full_sheet11.pdf]]
  • [get | view] (2010-06-29 09:14:44, 76.2 KB) [[attachment:full_sheet12.pdf]]
  • [get | view] (2010-07-06 10:08:39, 83.4 KB) [[attachment:full_sheet13.pdf]]
  • [get | view] (2010-06-01 08:40:12, 1391.7 KB) [[attachment:kld-tutorial.pdf]]
  • [get | view] (2010-05-27 06:38:11, 2850.3 KB) [[attachment:lect-ids.pdf]]
  • [get | view] (2010-05-20 13:07:56, 2099.2 KB) [[attachment:lect-struct.pdf]]
  • [get | view] (2010-04-20 09:19:25, 26591.3 KB) [[attachment:mnist_train.mat]]
  • [get | view] (2010-07-06 10:08:16, 192.5 KB) [[attachment:optim-intro.pdf]]
  • [get | view] (2010-04-20 09:19:00, 1.0 KB) [[attachment:sheet02.m]]
  • [get | view] (2010-05-11 08:23:01, 0.6 KB) [[attachment:sheet05.m]]
  • [get | view] (2010-05-27 10:02:41, 4.3 KB) [[attachment:sheet07.m]]
  • [get | view] (2010-06-01 08:39:07, 0.9 KB) [[attachment:sheet08.m]]
  • [get | view] (2010-06-08 09:38:00, 2.2 KB) [[attachment:sheet09.m]]
  • [get | view] (2010-06-08 09:38:06, 2.3 KB) [[attachment:sheet09.py]]
  • [get | view] (2010-06-22 08:07:55, 1.1 KB) [[attachment:sheet11.m]]
  • [get | view] (2010-06-22 08:07:51, 129.6 KB) [[attachment:splice-test-data.txt]]
  • [get | view] (2010-06-22 08:09:26, 5.4 KB) [[attachment:splice-test-label.txt]]
  • [get | view] (2010-06-22 08:07:41, 59.6 KB) [[attachment:splice-train-data.txt]]
  • [get | view] (2010-06-22 08:07:47, 2.5 KB) [[attachment:splice-train-label.txt]]
  • [get | view] (2010-04-27 08:49:35, 1515.8 KB) [[attachment:ssa_data.mat]]
  • [get | view] (2010-04-27 08:49:39, 585.7 KB) [[attachment:ssa_lecture.pdf]]
  • [get | view] (2010-04-27 08:49:50, 7.4 KB) [[attachment:ssa_simple.m]]
  • [get | view] (2010-05-27 06:34:10, 1217.5 KB) [[attachment:stud-data.mat.gz]]
  • [get | view] (2010-06-08 09:39:24, 1013.6 KB) [[attachment:textmining.pdf]]
  • [get | view] (2010-05-04 10:49:39, 1.0 KB) [[attachment:tkcca_example.m]]
  • [get | view] (2010-05-04 10:48:19, 4.1 KB) [[attachment:tkcca_simple.m]]
  • [get | view] (2010-05-04 10:48:24, 150.9 KB) [[attachment:tkcca_toy_data.mat]]
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