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= Documentation of the BBCI Matlab Toolbox =

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'''IN CONSTRUCTION'''

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== Contents ==

 * /ToolboxSetup - ''Installation, configuration and starting the toolbox''
 * /ToolboxData - ''Data formats, data structures, functions for fileio''
 * /ToolboxIntro - ''A gentle introduction to the toolbox''
 * /ToolboxPracticalExamples - ''Of investigating ERPs, and Spectral Analysis''
 * /ToolboxFileio - ''Functions for reading and writing EEG data''
 * /ToolboxVisualization - ''How to visualize EEG data''
 * /ToolboxClassification - ''How to use classifiers and tools for validation''
 * /ToolboxAutomation - ''Automatic analysis of a set of experiments, and generation of PDFs'' (includes calculation of Grand Average ERPs)
 * /ToolboxExperimentalStudy - ''Preparing scripts for an experimental study (acquisition and data conversion)''
 * /ToolboxOnline - All about the online system
 * Function reference: Basti please add the link here!

== Advanced topics ==
==== Preprocessing ====
 * /ToolboxFilter - ''Filter design [TODO]''

==== Neurophysiology ====
 * /ToolboxTimeFrequency - ''Time-frequency analysis using wavelets and short-time Fourier transform [in progress(Matthias)]''
 * /ToolboxSource - ''EEG source localization [TODO]''
 * /ToolboxCoherence - ''Coherence and phase locking* [TODO]''

==== Machine Learning ====
 * /ToolboxClassifier - ''Classifier selection (linear vs non-linear etc)''
 * /ToolboxPca - ''Principal components analysis (PCA) [TODO]''
 * /ToolboxIca - ''Independent components analysis (ICA) [TODO]''
 * /ToolboxCsp - ''Common Spatial Patterns (CSP), CSP patches, stationary CSP [TODO]''
 * /ToolboxSsa - ''Stationary Subspace Analysis (SSA) [TODO]''
 * /ToolboxCca - ''Canonical Correlation Analysis (CCA) [TODO]''
==== Statistics & Math ====
 * /ToolboxStatisticsTtest - ''T-test''
 * /ToolboxStatisticalAnova - ''Analysis of variance'' (ANOVA)
 * /ToolboxStatisticsNonparametric - ''Nonparametric statistics''


*Depending on permission to include Guido's code into the BBCI toolbox.